PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005597
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family DBB
Protein Properties Length: 127aa    MW: 13334.1 Da    PI: 5.8896
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-115974PU_refplantGDBView CDS
gnl|UG|Sof#S17266613PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.4e-092258437
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               r C+ +  ++++l+C++++ +lC+ C +  H g    H
  Sof005597 22 RPCDACAAEPARLHCREDGAFLCPGCDDRAH-GagsrH 58
               78***************************99.445667 PP

2zf-B_box25.33.2e-0861105341
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  Sof005597  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105
                689*****************************6688888898877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9111963IPR000315B-box-type zinc finger
SMARTSM003367.1E-51963IPR000315B-box-type zinc finger
PfamPF006434.6E-72259IPR000315B-box-type zinc finger
CDDcd000216.21E-62263No hitNo description
PROSITE profilePS5011910.42459106IPR000315B-box-type zinc finger
PfamPF006431.5E-661106IPR000315B-box-type zinc finger
SMARTSM003364.6E-964106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDTAVELEQK PAVGYWSVVG ARPCDACAAE PARLHCREDG AFLCPGCDDR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF  120
PSPAFAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160801e-176leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452430.14e-67hypothetical protein SORBIDRAFT_04g025660
SwissprotQ9SK537e-39COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLC5XXA84e-67C5XXA8_SORBI; Putative uncharacterized protein Sb04g025660
STRINGSb04g025660.11e-66(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.29e-25CONSTANS-like 3